How to read your pathology report

What do pT3, pN1, grade, margins and the other terms in my pathology report mean?

Reviewed by: Equipo CRC Warriors (pendiente de revisión clínica) Last reviewed: 02/11/2026 Updated: 02/11/2026 4 min
In short: The pathology report is the most important document in your record: it describes the removed tumour and determines the stage and treatment. It is written for doctors, but it can be understood with a short glossary: T and N (depth and nodes), grade, margins, vascular or perineural invasion, budding, tumour deposits and the molecular study (MMR/MSI, RAS, BRAF).

What it is and why it matters

When you have surgery, the segment of colon or rectum with the tumour and the lymph nodes is sent to the pathology department. There it is examined under the microscope and a report is written that sets the definitive stage (hence the letter "p", for pathological: pT, pN) and the factors that decide whether chemotherapy is needed. You are entitled to a copy; ask for it if you have not been given one.

The staging codes: pT, pN, pM

  • pT (tumour): how deeply it has penetrated the wall. T1 submucosa, T2 muscle layer, T3 through the muscle into the surrounding fat, T4a reaching the surface (serosa/peritoneum), T4b invading a neighbouring organ.
  • pN (nodes): N0 none involved; N1a 1 node; N1b 2-3; N1c tumour deposits without involved nodes; N2a 4-6; N2b 7 or more. It usually appears as a fraction: "2/18" means 2 involved out of 18 examined.
  • pM: metastases confirmed in the specimen (rare in the colon surgery report; metastases are assessed with imaging).

T and N give the stage: I (T1-2 N0), II (T3-4 N0), III (any T with N1-2). You can read what each implies in our guides on stage II and stage III.

Number of nodes examined

At least 12 should be examined. If there are fewer, the stage is less reliable and it counts as a risk factor in stage II. It does not depend only on the surgeon: also on anatomy, age and whether there was treatment before surgery (in rectal cancer fewer are commonly found).

Grade of differentiation

Describes how much the tumour cells resemble normal cells. Well or moderately differentiated (G1-G2, "low grade") is the most common and better behaved; poorly differentiated or undifferentiated (G3-G4, "high grade") is more aggressive. Note: in MSI-H tumours high grade does not carry the same negative meaning.

Margins

The edges of the specimen. R0 = clear margins, the tumour was removed whole. R1 = tumour cells at the edge (microscopic); R2 = visible tumour left behind. In rectal cancer the circumferential resection margin (CRM) is key: it is considered involved if the tumour is 1 mm or less from it.

Other factors you will read

TermWhat it meansWhy it matters
Lymphovascular invasion (LVI)Tumour cells inside blood or lymph vesselsRisk factor for relapse
Perineural invasion (PNI)Cells around nervesRisk factor
Tumour buddingSmall clusters of cells at the invasive front (low/intermediate/high)High = more risk
Tumour depositsNodules of tumour in the fat without node structureIf no nodes are involved, they make it N1c (stage III)
Perforation / obstructionThe tumour broke through or blocked the wallRisk factor
Tumour regression grade (TRG)In rectal cancer, how much tumour remains after chemoradiotherapy (0 = complete response)Prognosis

The molecular study

Sometimes it is in the same report and sometimes in a separate "molecular biology" report:

  • MMR / MSI: by immunohistochemistry it appears as "preserved expression of MLH1, MSH2, MSH6 and PMS2" (= pMMR, stable) or "loss of expression of…" (= dMMR, MSI-H). If MLH1 is lost, MLH1 methylation or BRAF is usually added to indicate whether it is sporadic or Lynch syndrome. Read more in MSI-H / dMMR.
  • KRAS / NRAS / BRAF: "wild-type" or "mutated" with the specific change (p.G12D, p.V600E…). Requested mainly in metastatic disease. See KRAS and BRAF.
  • HER2: by immunohistochemistry (0, 1+, 2+, 3+) and, if 2+, by hybridisation (FISH/ISH).

A worked example

"Adenocarcinoma of the sigmoid colon, moderately differentiated, pT3 pN1b (2/16), clear margins (R0), lymphovascular invasion present, perineural absent, low budding. Preserved expression of MMR proteins." Translation: a tumour through the wall but not reaching the surface, 2 nodes involved out of 16, fully removed, with one risk factor (LVI), stable (MSS) → stage IIIB; adjuvant chemotherapy will be recommended.

What to ask at your appointment

  • Can I have a copy of the full report, including the molecular study?
  • What is my exact stage and which risk factors appear?
  • Are the margins clear? (In rectal cancer: how wide is the circumferential margin?)
  • Has MMR/MSI been tested? And RAS/BRAF/HER2 if relevant?
  • Is there anything in the report that changes the treatment you had proposed?

Frequently asked questions

Why is the stage in the report different from the one I was told before surgery?

Before surgery the stage is "clinical" (c), estimated with CT or MRI. The one from the specimen is "pathological" (p) and is definitive, because the tumour and nodes have been seen under the microscope. It is normal for it to change, in either direction.

What is "tumour budding"?

Small clusters of cells (1-4) that break away from the tumour at its advancing edge. It is graded low, intermediate or high. High budding indicates more invasive capacity and is taken into account as a risk factor, especially in stages I-II.

Can I ask for the specimen to be reviewed at another hospital?

Yes. The slides and the paraffin block can be lent for a second reading or for additional molecular tests. This is requested through your oncologist or Patient Services.

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Sources

This guide is general information prepared by the CRC Warriors Association (non-profit) from public medical sources. It does not replace the assessment of your oncologist or medical team, who know your case. If you spot an error, write to contacto@crcwarriors.org.